Lisa K. Johnson

Picture of Lisa K. Johnson
  • Grad Group: Molecular, Cellular, and Integrative Physiology
  • Major Professor: C Titus Brown
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Degrees

  • BS - Eckerd College - Biochemistry - 2002
  • MS - University of North Carolina at Wilmington - Biology - 2004
  • MS - Florida Institute of Technology - Environmental Resource Management - 2009

Research Interest Summary

Evolutionary history of functional response; salinity stress; data science; multi-species transcriptomics and orthologous gene expression profiling.

Research Interests

Evolutionary history of functional response; salinity stress; data science; multi-species transcriptomics and orthologous gene expression profiling.

Publications

  • Gavrilova O, Haluzik M, Matsusue K, Cutson JJ, Johnson L, Dietz KR, Nicol CJ, Vinson C, Gonzalez FJ, Reitman ML. 2003. Liver peroxisome proliferator-activated receptor-gamma contributes to hepatic steatosis, triglyceride clearance, and regulation of body fat mass. Journal of Biological Chemistry. 278(36):34268-34276.
  • Johnson LK, Dillaman RM, Gay DM, Blum JE, Kinsey ST. 2004. Metabolic influences of fiber size in aerobic and anaerobic locomotor muscles of the blue crab, Callinectes sapidus. Journal of Experimental Biology. 207:4045-4056.
  • Montenegro D, Kalpana K, Chrissian C, Sharma A, Takaoka A, Iacovidou, M, Soll C, Aminova O, Heguy A, Johnson (Cohen) L, Shen S, Kawamura A. 2015. Uncovering "herbal probiotics" in Juzen-taiho-to, an immune-boosting herbal formulation. Bioorganic & Medicinal Chemistry Letters. 25(3):466-9.
  • Maass K, Shekar A, Lu J, Kang G, See F, Kim E, Delgado C, Shen S, Johnson (Cohen) L, Fishman G. 2015. Isolation and Characterization of ESC-Derived Cardiac Purkinje Cells. Stem Cells. 33(4):1102-12.
  • Johnson (Cohen) L, Efstathiadis E, Shen S. 2015. Chapter 9: De novo transcriptome assembly. In: Next Generation DNA Sequencing Informatics, 2nd Edition. Ed. Stuart Brown. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • Cartularo L, Kluz T, Johnson (Cohen) L, Shen SS, Costa M. 2016. Molecular Mechanisms of Malignant Transformation by Low Dose Cadmium in Normal Human Bronchial Epithelial Cells. PloS One. 11(5), e0155002.
  • Hanley O, Zewdu R, Johnson (Cohen) LJ, Jung H, Lacombe J, Philippidou P, Lee DH, Selleri L, Dasen JS. 2016. Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns. Neuron. 91(5): 1005-1020.
  • Daniel Standage, Ali Aliyari, Lisa Johnson (Cohen), Michael R Crusoe, Tim Head, Luiz Irber, Shannon EK Joslin, NB Kingsley, Kevin D Murray, Russell Neches, Camille Scott, Ryan Shean, Sascha Steinbiss, Cait Sydney, C Titus Brown. 2017. khmer release v2. 1: software for biological sequence analysis. The Journal of Open Source Software. Volume 2(15). doi:10.21105/joss.00272
  • Alexander H, Johnson LK, Brown CT. 2018. Keeping it light: (Re)analyzing community-wide datasets without major infrastructure. GigaScience. Volume 8(2): https://doi.org/10.1093/gigascience/giy159
  • Johnson LK, Alexander H, Brown CT. 2018. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes. GigaScience. Volume 8(4): https://doi.org/10.1093/gigascience/giy158